Tissue expression of PODXL - Staining in adipose tissue - The Human Protein Atlas

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PODXL

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TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	8.0	TPM
GTEx:	26.0	RPKM
FANTOM5:	77.0	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Chondrocytes:	Not detected
Fibroblasts:	Not detected
Adipocytes:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA002110		Antibody HPA045507		Antibody CAB016169		Antibody CAB062558		Antibody CAB068219		Antibody CAB068220
Chondrocytes	Not detected		Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Adipocytes	Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Fibroblasts:	Not detected
Peripheral nerve:	Not detected
Chondrocytes:	Not detected

Antibody staining	Antibody HPA002110		Antibody HPA045507		Antibody CAB016169		Antibody CAB062558		Antibody CAB068219		Antibody CAB068220
Adipocytes	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Chondrocytes	Not detected

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	8.0

N/A

Female, age 80

Sample 1
TPM: 10

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 6.4

N/A

Female, age 57

Sample 3
TPM: 6.4

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 6.2

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 11.1

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	26.0

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 21.9

Samples: 350

Max RPKM: 70.8
Min RPKM: 4.5
Std RPKM: 8.7
Median RPKM: 20.3

GTEX-T5JC-0526-SM-32PM7

20-29 years, male

70.8

GTEX-POYW-0726-SM-2XCEO

60-69 years, male

56.7

GTEX-14E6C-0226-SM-5S2N3

40-49 years, male

49.6

GTEX-PWCY-1926-SM-3NB25

20-29 years, female

48.5

GTEX-13OW8-1226-SM-5K7XD

60-69 years, male

43.5

GTEX-S4UY-0226-SM-3K2AP

40-49 years, female

43.1

GTEX-RWSA-0226-SM-2XCBA

40-49 years, male

41.4

GTEX-146FR-1826-SM-5QGPF

60-69 years, female

41.2

GTEX-139T6-2126-SM-5KM37

50-59 years, male

40.7

GTEX-139D8-0326-SM-5IJCJ

30-39 years, female

40.5

Show all

Adipose - Visceral (Omentum)
RPKM: 32.3

Samples: 227

Max RPKM: 92.9
Min RPKM: 8.4
Std RPKM: 14.6
Median RPKM: 30.5

GTEX-14ICL-0926-SM-5S2TU

30-39 years, male

92.9

GTEX-13OVH-1126-SM-5K7YP

70-79 years, male

77.7

GTEX-11NV4-1426-SM-5BC4W

60-69 years, male

72.7

GTEX-WFON-1226-SM-3TW8F

40-49 years, male

67.0

GTEX-13PL6-0926-SM-5KLYY

40-49 years, female

64.7

GTEX-ZYT6-2126-SM-5GZZ4

30-39 years, male

63.2

GTEX-1192X-1526-SM-5H11I

50-59 years, male

62.6

GTEX-ZYVF-1026-SM-5E44V

50-59 years, female

61.6

GTEX-ZLV1-0926-SM-5S2MR

60-69 years, female

60.9

GTEX-139T6-0526-SM-5IJC9

50-59 years, male

59.6

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	77.0

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 77.0

65,65,76 years, mixed

77.0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.