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PODXL

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.9TPM
GTEx:10.3RPKM
FANTOM5:41.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA002110

  

Antibody HPA045507

  

Antibody CAB016169

  

Antibody CAB062558

  

Antibody CAB068219

  

Antibody CAB068220

  

Endothelial cells

 High   Not detected   Medium   Not detected   Medium   High  

Glandular cells

 Low   Low   Not detected   Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

 Medium   Not detected   Not detected  
              
           
           
           

COLON - HPA RNA-seq

Average TPM

2.9
overview Male, age 54 Sample 1
TPM: 3.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 2.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.1
Samples: 149

Max RPKM: 31.2
Min RPKM: 2.2
Std RPKM: 5.1
Median RPKM: 10.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 31.2
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 30.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 29.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 26.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 24.4
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 22.6
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 22.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 20.6
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 20.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 20.1
Show all
Colon - Transverse
RPKM: 9.7
Samples: 196

Max RPKM: 35.0
Min RPKM: 2.6
Std RPKM: 5.7
Median RPKM: 8.0
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 35.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 34.0
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 31.3
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 30.1
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 29.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 26.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 25.7
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 23.9
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 22.6
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 22.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

41.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 41.2
FF:10014-101C5 62,83,84 years, mixed 41.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.