Fields »
ABOUT
HELP
BLOG
BST2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:47.6TPM
GTEx:53.0RPKM
FANTOM5:12.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA017060

  

Endothelial cells

 High  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

47.6
overview Male, age 54 Sample 1
TPM: 30.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 27.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 19.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 72.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 64.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 49
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 35.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 32.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 74.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 41
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 36
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 79.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 55.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

53.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 63.8
Samples: 149

Max RPKM: 207.1
Min RPKM: 25.5
Std RPKM: 26.6
Median RPKM: 57.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 207.1
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 154.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 125.6
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 125.5
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 124.6
GTEX-145LS-2926-SM-5O99G 60-69 years, female 122.7
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 119.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 107.9
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 107.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 104.0
Show all
Colon - Transverse
RPKM: 44.8
Samples: 196

Max RPKM: 129.5
Min RPKM: 7.8
Std RPKM: 23.9
Median RPKM: 40.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 129.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 122.4
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 113.5
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 112.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 111.2
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 101.5
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 100.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 96.7
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 95.6
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 94.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

12.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 12.4
FF:10014-101C5 62,83,84 years, mixed 12.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.