Fields »
ABOUT
HELP
BLOG
ACLY

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:36.0TPM
GTEx:18.9RPKM
FANTOM5:38.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA022434

  

Antibody HPA022953

  

Antibody HPA022959

  

Antibody HPA028758

  

Antibody CAB007783

  

Endothelial cells

 Medium   Low   Not detected   Medium   Medium  

Glandular cells

 Medium   Medium   Low   Medium   High  

Peripheral nerve/ganglion

 Medium   Medium   Medium   Medium   Medium  
         
         
         

COLON - HPA RNA-seq

Average TPM

36.0
overview Male, age 54 Sample 1
TPM: 61.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 34.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 38.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 26.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 26.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 34.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 39
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 29.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 34.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 34.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 49.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 34.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

18.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.5
Samples: 149

Max RPKM: 41.3
Min RPKM: 8.6
Std RPKM: 4.4
Median RPKM: 16.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 41.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 30.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 28.9
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 25.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 25.2
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 24.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 24.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 23.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 23.4
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 23.1
Show all
Colon - Transverse
RPKM: 20.7
Samples: 196

Max RPKM: 144.8
Min RPKM: 11.7
Std RPKM: 10.9
Median RPKM: 19.0
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 144.8
GTEX-144GN-1126-SM-5LU33 50-59 years, male 61.1
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 52.1
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 45.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 44.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 37.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 36.1
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 32.6
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 31.9
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 30.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.6
FF:10014-101C5 62,83,84 years, mixed 38.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.