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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:34.2TPM
GTEx:13.4RPKM
FANTOM5:30.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA039435

  

Antibody HPA039536

  

Antibody HPA061528

  

Endothelial cells

 Medium   Not detected   Not detected  

Glandular cells

 High   High   Medium  

Peripheral nerve/ganglion

 Low   High   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

34.2
overview Male, age 54 Sample 1
TPM: 26.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 43
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 35.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 35.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 36.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 46.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 35.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 44.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 25.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.9
Samples: 149

Max RPKM: 19.6
Min RPKM: 6.9
Std RPKM: 2.2
Median RPKM: 12.9
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 19.6
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 17.2
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 17.2
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 17.2
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 17.2
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 17.0
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 16.8
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 16.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 16.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 16.7
Show all
Colon - Transverse
RPKM: 13.8
Samples: 196

Max RPKM: 23.3
Min RPKM: 3.1
Std RPKM: 2.9
Median RPKM: 13.6
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 23.3
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 23.1
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 21.4
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 21.1
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 21.1
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 19.2
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 19.1
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 19.0
GTEX-QEL4-1926-SM-4R1JI 50-59 years, male 18.6
GTEX-139YR-2126-SM-5KM11 50-59 years, male 18.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

30.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 30.9
FF:10014-101C5 62,83,84 years, mixed 30.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.