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MNS1

COLON - Expression summary

RNA expression
HPA:2.0TPM
GTEx:0.9RPKM
FANTOM5:3.9Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA039975

  

Antibody HPA040382

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

2.0
overview Male, age 54 Sample 1
TPM: 1.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.9
Samples: 149

Max RPKM: 2.7
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 2.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 2.4
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 2.3
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 2.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 2.2
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 2.0
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 1.9
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 1.9
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 1.8
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 1.7
Show all
Colon - Transverse
RPKM: 0.9
Samples: 196

Max RPKM: 3.9
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 3.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 3.3
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 3.0
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 2.6
GTEX-1128S-1626-SM-5H12O 60-69 years, female 2.5
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 2.5
GTEX-144GN-1126-SM-5LU33 50-59 years, male 2.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 2.3
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 2.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 2.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

3.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 3.9
FF:10014-101C5 62,83,84 years, mixed 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.