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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:151.7TPM
GTEx:99.8RPKM
FANTOM5:174.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA008455

  

Antibody HPA031125

  

Antibody CAB002781

  

Antibody CAB068195

  

Endothelial cells

 Not detected   Medium   Low   Not detected  

Glandular cells

 Medium   Medium   Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Medium   Medium  
          
       
       
       

COLON - HPA RNA-seq

Average TPM

151.7
overview Male, age 54 Sample 1
TPM: 173.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 108.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 116.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 201.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 117.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 189.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 141.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 115.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 178.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 125.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 187.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 115.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 201.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

99.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 92.5
Samples: 149

Max RPKM: 315.8
Min RPKM: 30.8
Std RPKM: 47.7
Median RPKM: 77.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 315.8
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 262.7
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 252.7
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 228.7
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 217.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 200.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 197.9
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 197.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 193.6
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 178.7
Show all
Colon - Transverse
RPKM: 105.4
Samples: 196

Max RPKM: 656.4
Min RPKM: 42.5
Std RPKM: 64.8
Median RPKM: 90.0
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 656.4
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 519.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 293.7
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 260.8
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 256.4
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 255.9
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 220.7
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 216.9
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 213.5
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 210.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

174.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 174.8
FF:10014-101C5 62,83,84 years, mixed 174.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.