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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:72.1TPM
GTEx:50.4RPKM
FANTOM5:13.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA000263

  

Antibody HPA011135

  

Antibody HPA011227

  

Antibody CAB010898

  

Antibody CAB047338

  

Endothelial cells

 Not detected   Medium   Medium   Not detected   Medium  

Glandular cells

 Not detected   Not detected   Medium   Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium  
         
         
         

COLON - HPA RNA-seq

Average TPM

72.1
overview Male, age 54 Sample 1
TPM: 46.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 52.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 31.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 59.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 77.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 146.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 77.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 54.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 114.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 49.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 83.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 83.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 59.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

50.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 61.8
Samples: 149

Max RPKM: 160.9
Min RPKM: 31.5
Std RPKM: 20.2
Median RPKM: 57.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 160.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 142.4
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 138.2
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 114.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 113.0
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 111.7
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 102.7
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 101.7
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 98.6
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 98.6
Show all
Colon - Transverse
RPKM: 41.7
Samples: 196

Max RPKM: 144.1
Min RPKM: 6.1
Std RPKM: 26.3
Median RPKM: 32.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 144.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 133.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 127.0
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 125.1
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 121.1
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 120.8
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 104.0
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 101.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 98.7
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 92.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

13.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 13.0
FF:10014-101C5 62,83,84 years, mixed 13.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.