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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.7TPM
GTEx:4.3RPKM
FANTOM5:20.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA062773

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

15.7
overview Male, age 54 Sample 1
TPM: 17.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 18.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.6
Samples: 149

Max RPKM: 5.9
Min RPKM: 1.5
Std RPKM: 0.8
Median RPKM: 3.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 5.9
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 5.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 5.9
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 5.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 5.8
GTEX-12696-1926-SM-5EGJT 60-69 years, male 5.6
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 5.4
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 5.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 5.2
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 5.2
Show all
Colon - Transverse
RPKM: 4.8
Samples: 196

Max RPKM: 9.9
Min RPKM: 1.3
Std RPKM: 1.4
Median RPKM: 4.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 9.9
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 8.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 8.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 8.0
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 7.7
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 7.7
GTEX-1128S-1626-SM-5H12O 60-69 years, female 7.6
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 7.6
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 7.6
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 7.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

20.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 20.4
FF:10014-101C5 62,83,84 years, mixed 20.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.