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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.0TPM
GTEx:31.4RPKM
FANTOM5:39.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA058265

  

Antibody CAB046486

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

16.0
overview Male, age 54 Sample 1
TPM: 17.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 13.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 25.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 14.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 17.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

31.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 37.2
Samples: 149

Max RPKM: 94.8
Min RPKM: 18.8
Std RPKM: 8.5
Median RPKM: 36.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 94.8
GTEX-12696-1926-SM-5EGJT 60-69 years, male 63.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 61.3
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 58.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 56.1
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 53.3
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 50.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 49.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 48.3
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 47.7
Show all
Colon - Transverse
RPKM: 27.0
Samples: 196

Max RPKM: 70.6
Min RPKM: 14.6
Std RPKM: 8.9
Median RPKM: 24.3
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 70.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 63.9
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 51.9
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 51.0
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 50.9
GTEX-11GSP-1626-SM-5986N 60-69 years, female 48.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 45.1
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 42.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 42.2
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 42.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

39.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 39.3
FF:10014-101C5 62,83,84 years, mixed 39.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.