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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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SNRNP25
  • TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SNRNP25

Gene description

Small nuclear ribonucleoprotein 25kDa (U11/U12)

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Mainly cytoplasmic expression in most tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Uncertain based on 2 antibodies.
HPA041183 , HPA044248
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Pancreas

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

SNRNP25 (HGNC Symbol)

Synonyms

C16orf33

Description

Small nuclear ribonucleoprotein 25kDa (U11/U12) (HGNC Symbol)

Entrez gene summary

Two types of spliceosomes catalyze splicing of pre-mRNAs. The major U2-type spliceosome is found in all eukaryotes and removes U2-type introns, which represent more than 99% of pre-mRNA introns. The minor U12-type spliceosome is found in some eukaryotes and removes U12-type introns, which are rare and have distinct splice consensus signals. The U12-type spliceosome consists of several small nuclear RNAs and associated proteins. This gene encodes a 25K protein that is a component of the U12-type spliceosome. [provided by RefSeq, Apr 2010]

Chromosome

16

Cytoband

p13.3

Chromosome location (bp)

53010 - 57669

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000161981 (version 83.38)

Entrez gene

79622

UniProt

Q9BV90 (UniProt - Evidence at protein level)

neXtProt

NX_Q9BV90

Antibodypedia

SNRNP25 antibodies

PROTEIN BROWSER

SNRNP25-001
SNRNP25-006
SNRNP25-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SNRNP25-001
ENSP00000293861
ENST00000293861
Q4TT61 [Direct mapping]
Chromosome 16 open reading frame 33; U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Show all
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0045171 [intercellular bridge]
Show all
123 aa
14.3 kDa
No 0
SNRNP25-006
ENSP00000391289
ENST00000417493
B8ZZ06 [Direct mapping]
Chromosome 16 open reading frame 33; U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Show all
Predicted intracellular proteins
Show all
96 aa
11.1 kDa
No 0
SNRNP25-201
ENSP00000372482
ENST00000383018
Q9BV90 [Direct mapping]
U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Show all
Predicted intracellular proteins
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005689 [U12-type spliceosomal complex]
GO:0005737 [cytoplasm]
GO:0008380 [RNA splicing]
GO:0010467 [gene expression]
GO:0045171 [intercellular bridge]
Show all
132 aa
15.3 kDa
No 0

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