Fields »
ABOUT
HELP
BLOG
PIGR

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:1721.7TPM
GTEx:502.0RPKM
FANTOM5:2794.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA006154

  

Antibody HPA012012

  

Antibody CAB009454

  

Endothelial cells

 Low   Not detected   Medium  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

1721.7
overview Male, age 54 Sample 1
TPM: 3008.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1227
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1709
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2053.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 852
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 722
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1463.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1593
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1892.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2313.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2584.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1728.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1235.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

502.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.2
Samples: 149

Max RPKM: 207.6
Min RPKM: 0.0
Std RPKM: 32.2
Median RPKM: 0.5
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 207.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 202.2
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 157.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 134.7
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 116.3
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 98.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 80.0
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 61.8
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 59.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 41.2
Show all
Colon - Transverse
RPKM: 875.9
Samples: 196

Max RPKM: 2503.2
Min RPKM: 0.0
Std RPKM: 701.8
Median RPKM: 999.5
GTEX-R55D-1826-SM-48FEF 50-59 years, male 2503.2
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 2341.7
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 2335.8
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 2235.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 2224.5
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 2138.0
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 2024.0
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 2016.5
GTEX-X15G-1326-SM-4PQZJ 50-59 years, female 1995.3
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 1973.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2794.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2794.3
FF:10014-101C5 62,83,84 years, mixed 2794.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.