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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:20.9TPM
GTEx:10.6RPKM
FANTOM5:19.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA007657

  

Antibody HPA008180

  

Antibody CAB008972

  

Endothelial cells

 Medium   Low   Medium  

Glandular cells

 Medium   High   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

20.9
overview Male, age 54 Sample 1
TPM: 15.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 15.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 32.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 25.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 26.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.7
Samples: 149

Max RPKM: 12.9
Min RPKM: 0.3
Std RPKM: 1.5
Median RPKM: 1.3
GTEX-V955-1726-SM-4JBHF 60-69 years, male 12.9
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 8.0
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 7.8
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 4.7
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 4.3
GTEX-XBED-1726-SM-47JYO 60-69 years, male 4.1
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 4.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 4.0
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 3.8
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 3.7
Show all
Colon - Transverse
RPKM: 17.3
Samples: 196

Max RPKM: 55.9
Min RPKM: 0.5
Std RPKM: 12.6
Median RPKM: 19.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 55.9
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 49.1
GTEX-PWCY-1026-SM-48TD4 20-29 years, female 45.5
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 42.2
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 36.9
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 36.8
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 36.4
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 36.3
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 36.2
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 36.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

19.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 19.1
FF:10014-101C5 62,83,84 years, mixed 19.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.