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CDX2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:31.4TPM
GTEx:21.1RPKM
FANTOM5:2.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody CAB002221

  

Endothelial cells

 Not detected  

Glandular cells

 High  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

31.4
overview Male, age 54 Sample 1
TPM: 27.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 32.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 67.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 17.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 31.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 33.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 49
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 29.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 41.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.5
Samples: 149

Max RPKM: 11.6
Min RPKM: 0.0
Std RPKM: 1.7
Median RPKM: 0.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 11.6
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 11.3
GTEX-XBED-1726-SM-47JYO 60-69 years, male 8.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 7.2
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 4.7
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 4.6
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 3.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 2.4
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 1.7
Show all
Colon - Transverse
RPKM: 36.7
Samples: 196

Max RPKM: 108.9
Min RPKM: 0.0
Std RPKM: 28.6
Median RPKM: 41.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 108.9
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 93.6
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 89.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 86.2
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 85.7
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 83.5
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 81.5
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 80.4
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 79.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 79.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2.3
FF:10014-101C5 62,83,84 years, mixed 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.