Fields »
ABOUT
HELP
BLOG
AXL

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.4TPM
GTEx:23.8RPKM
FANTOM5:56.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA037422

  

Antibody HPA037423

  

Antibody CAB032501

  

Endothelial cells

 Low   Medium   Low  

Glandular cells

 Medium   Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Low  
     
     

COLON - HPA RNA-seq

Average TPM

15.4
overview Male, age 54 Sample 1
TPM: 9.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 33.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 10.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 25
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

23.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 31.3
Samples: 149

Max RPKM: 45.4
Min RPKM: 20.9
Std RPKM: 4.8
Median RPKM: 31.0
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 45.4
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 41.5
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 41.4
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 41.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 40.9
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 40.8
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 40.3
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 39.8
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 39.7
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 39.5
Show all
Colon - Transverse
RPKM: 18.0
Samples: 196

Max RPKM: 45.4
Min RPKM: 2.4
Std RPKM: 11.4
Median RPKM: 14.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 45.4
GTEX-S341-1426-SM-4AD6U 40-49 years, female 44.0
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 43.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 42.9
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 41.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 39.7
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 39.3
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 38.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 38.2
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 38.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.4
FF:10014-101C5 62,83,84 years, mixed 56.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.