Tissue expression of SETD5 - Summary - The Human Protein Atlas

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SETD5

TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	SETD5
Gene description	SET domain containing 5
Protein class	Disease related genes Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	8
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression in all tissues.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 2 antibodies. HPA035574 , CAB017093
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	SETD5 (HGNC Symbol)
Synonyms	FLJ10707
Description	SET domain containing 5 (HGNC Symbol)
Entrez gene summary	This function of this gene has yet to be determined but mutations in this gene have been associated with autosomal dominant mental retardation-23. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2014]
Chromosome	3
Cytoband	p25.3
Chromosome location (bp)	9397615 - 9479240
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000168137 (version 83.38)
Entrez gene	55209
UniProt	Q9C0A6 (UniProt - Evidence at protein level)
neXtProt	NX_Q9C0A6
Antibodypedia	SETD5 antibodies

PROTEIN BROWSER

SETD5-001	SETD5-003	SETD5-004	SETD5-013	SETD5-015	SETD5-020	SETD5-023	SETD5-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SETD5-001 ENSP00000383939 ENST00000406341	Q9C0A6 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Disease related genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	1442 aa 157.5 kDa	No	0
SETD5-003 ENSP00000302028 ENST00000302463	Q9C0A6 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Disease related genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	1344 aa 147.4 kDa	No	0
SETD5-004 ENSP00000384114 ENST00000407969	E7EWN3 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	1461 aa 159.4 kDa	No	0
SETD5-013 ENSP00000399993 ENST00000421188	H7C1F2 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		442 aa 48.1 kDa	No	0
SETD5-015 ENSP00000382593 ENST00000399686	H0Y3R4 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	911 aa 99.7 kDa	No	0
SETD5-020 ENSP00000413786 ENST00000450326	C9JLA7 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		162 aa 17.4 kDa	No	0
SETD5-023 ENSP00000408837 ENST00000442373	C9JLM1 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		170 aa 19.3 kDa	No	0
SETD5-201 ENSP00000385852 ENST00000402198	Q9C0A6 [Direct mapping] SET domain-containing protein 5 Show all	Predicted intracellular proteins Disease related genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	1442 aa 157.5 kDa	No	0

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.