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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:84.8TPM
GTEx:38.9RPKM
FANTOM5:131.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
 

Antibody staining

Antibody HPA032047

  

Antibody CAB002139

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

84.8
overview Male, age 54 Sample 1
TPM: 99.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 92.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 113.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 145.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 49.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 47.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 64
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 75.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 55.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 95
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 89.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 92.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 82.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

38.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.3
Samples: 149

Max RPKM: 27.6
Min RPKM: 3.6
Std RPKM: 4.1
Median RPKM: 9.6
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 27.6
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 26.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 22.9
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 22.4
GTEX-V955-1726-SM-4JBHF 60-69 years, male 22.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 21.5
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 19.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 18.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 18.2
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 17.7
Show all
Colon - Transverse
RPKM: 60.7
Samples: 196

Max RPKM: 185.8
Min RPKM: 4.3
Std RPKM: 40.1
Median RPKM: 68.6
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 185.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 148.7
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 147.1
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 140.4
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 138.8
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 129.7
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 129.5
GTEX-1399U-1926-SM-5IFH7 50-59 years, female 126.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 125.3
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 125.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

131.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 131.0
FF:10014-101C5 62,83,84 years, mixed 131.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.