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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.8TPM
GTEx:23.4RPKM
FANTOM5:21.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA044258

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

16.8
overview Male, age 54 Sample 1
TPM: 19.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 20.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 21.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

23.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.4
Samples: 149

Max RPKM: 43.2
Min RPKM: 10.8
Std RPKM: 4.6
Median RPKM: 21.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 43.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 34.9
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 34.4
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 33.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 31.3
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 30.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 30.7
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 29.7
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 29.6
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 29.5
Show all
Colon - Transverse
RPKM: 24.2
Samples: 196

Max RPKM: 49.5
Min RPKM: 13.3
Std RPKM: 4.7
Median RPKM: 23.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 49.5
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 41.4
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 39.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 34.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 33.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 33.3
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 32.6
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 32.5
GTEX-144GM-1226-SM-5LU52 20-29 years, male 32.2
GTEX-QMRM-1226-SM-447C6 50-59 years, male 32.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.0
FF:10014-101C5 62,83,84 years, mixed 21.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.