Fields »
ABOUT
HELP
BLOG
FLNA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:221.7TPM
GTEx:1033.4RPKM
FANTOM5:1754.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA001115

  

Antibody HPA002925

  

Antibody CAB000356

  

Endothelial cells

 Medium   Low   Medium  

Glandular cells

 Not detected   Medium   Not detected  

Peripheral nerve/ganglion

 Not detected  
        
     
     

COLON - HPA RNA-seq

Average TPM

221.7
overview Male, age 54 Sample 1
TPM: 189.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 155
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 63.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 216.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 175.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 835
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 426.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 53.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 153.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 319
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 219.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1033.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1564.4
Samples: 149

Max RPKM: 2652.5
Min RPKM: 678.9
Std RPKM: 421.3
Median RPKM: 1530.2
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 2652.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 2620.8
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 2478.4
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 2370.2
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 2271.9
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 2244.9
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 2243.0
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 2229.1
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2219.7
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 2206.7
Show all
Colon - Transverse
RPKM: 629.7
Samples: 196

Max RPKM: 2827.4
Min RPKM: 22.5
Std RPKM: 610.8
Median RPKM: 405.0
GTEX-11GSP-1626-SM-5986N 60-69 years, female 2827.4
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 2250.6
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 2243.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 2133.5
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 2023.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 1851.8
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 1823.6
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 1778.0
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 1722.6
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 1713.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1754.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1754.3
FF:10014-101C5 62,83,84 years, mixed 1754.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.