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CASP4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.9TPM
GTEx:9.2RPKM
FANTOM5:46.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA027588

  

Antibody CAB037167

  

Endothelial cells

 Not detected   High  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

19.9
overview Male, age 54 Sample 1
TPM: 20.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 24.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 27.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 29.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 23.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.2
Samples: 149

Max RPKM: 26.9
Min RPKM: 3.4
Std RPKM: 3.9
Median RPKM: 7.2
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 26.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 21.1
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 20.0
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 19.0
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 17.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 17.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 17.0
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 16.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 16.3
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 16.1
Show all
Colon - Transverse
RPKM: 9.9
Samples: 196

Max RPKM: 45.9
Min RPKM: 3.6
Std RPKM: 4.3
Median RPKM: 9.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 45.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 23.4
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 23.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 20.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 20.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 19.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 19.5
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 19.0
GTEX-144GM-1226-SM-5LU52 20-29 years, male 18.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 18.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

46.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 46.6
FF:10014-101C5 62,83,84 years, mixed 46.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.