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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:14.2TPM
GTEx:25.0RPKM
FANTOM5:53.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA007187

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

14.2
overview Male, age 54 Sample 1
TPM: 11.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 17.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 25.6
Samples: 149

Max RPKM: 37.2
Min RPKM: 17.8
Std RPKM: 3.8
Median RPKM: 25.4
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 37.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 36.6
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 35.1
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 34.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 33.8
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 33.6
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 33.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 32.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 32.5
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 32.4
Show all
Colon - Transverse
RPKM: 24.5
Samples: 196

Max RPKM: 39.1
Min RPKM: 16.2
Std RPKM: 3.2
Median RPKM: 24.2
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 39.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 35.1
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 34.3
GTEX-QMRM-1226-SM-447C6 50-59 years, male 31.6
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 31.5
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 31.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 31.1
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 31.0
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 30.9
GTEX-1128S-1626-SM-5H12O 60-69 years, female 30.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

53.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 53.5
FF:10014-101C5 62,83,84 years, mixed 53.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.