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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.9TPM
GTEx:1.9RPKM
FANTOM5:112.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA001817

  

Antibody HPA001832

  

Antibody CAB016381

  

Endothelial cells

 Medium   Low   Not detected  

Glandular cells

 Medium   Low   Not detected  

Peripheral nerve/ganglion

 Medium   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

5.9
overview Male, age 54 Sample 1
TPM: 1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 14.3
Min RPKM: 0.2
Std RPKM: 1.3
Median RPKM: 1.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 14.3
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 5.0
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 4.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 3.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 3.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 3.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 3.0
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 2.9
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 2.9
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 2.9
Show all
Colon - Transverse
RPKM: 2.2
Samples: 196

Max RPKM: 15.3
Min RPKM: 0.3
Std RPKM: 1.8
Median RPKM: 1.7
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 15.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 9.8
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 8.3
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 7.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 7.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 7.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 6.2
GTEX-R55D-1826-SM-48FEF 50-59 years, male 6.0
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 5.9
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 5.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

112.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 112.6
FF:10014-101C5 62,83,84 years, mixed 112.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.