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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.4TPM
GTEx:5.3RPKM
FANTOM5:44.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
 

Antibody staining

Antibody HPA001231

  

Antibody CAB004492

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Low   Low  
   
   

COLON - HPA RNA-seq

Average TPM

17.4
overview Male, age 54 Sample 1
TPM: 16.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 19
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 19.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 21.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 19.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 17.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.9
Samples: 149

Max RPKM: 20.0
Min RPKM: 0.9
Std RPKM: 3.3
Median RPKM: 2.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 20.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 19.1
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 18.1
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 15.7
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 13.7
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 13.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 11.8
GTEX-1122O-1426-SM-5H11R 60-69 years, female 10.6
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 10.3
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 10.2
Show all
Colon - Transverse
RPKM: 6.3
Samples: 196

Max RPKM: 94.8
Min RPKM: 1.3
Std RPKM: 6.8
Median RPKM: 6.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 94.8
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 17.2
GTEX-144GM-1226-SM-5LU52 20-29 years, male 13.5
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 12.4
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 12.2
GTEX-144GN-1126-SM-5LU33 50-59 years, male 11.8
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 11.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 10.7
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 10.4
GTEX-1128S-1626-SM-5H12O 60-69 years, female 10.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

44.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 44.0
FF:10014-101C5 62,83,84 years, mixed 44.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.