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ABCF2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.6TPM
GTEx:12.7RPKM
FANTOM5:19.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA020091

  

Antibody HPA021815

  

Antibody HPA030388

  

Antibody CAB020682

  

Endothelial cells

 Medium   Low   Low   Low  

Glandular cells

 High   Medium   Medium   Not detected  

Peripheral nerve/ganglion

 Low   High   Low   Low  
       
       
       

COLON - HPA RNA-seq

Average TPM

18.6
overview Male, age 54 Sample 1
TPM: 14.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 19.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 19.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.4
Samples: 149

Max RPKM: 35.5
Min RPKM: 6.5
Std RPKM: 4.1
Median RPKM: 12.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 35.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 28.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 25.9
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 24.9
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 24.8
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 24.2
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 23.1
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 21.7
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 20.4
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 20.0
Show all
Colon - Transverse
RPKM: 12.1
Samples: 196

Max RPKM: 29.8
Min RPKM: 4.5
Std RPKM: 3.4
Median RPKM: 11.6
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 29.8
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 26.7
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 23.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 22.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 21.6
GTEX-ZY6K-1226-SM-5GZYL 50-59 years, male 19.2
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 19.0
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 19.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 18.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 18.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

19.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 19.6
FF:10014-101C5 62,83,84 years, mixed 19.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.